Getting Started | | |
Locate and Label Head | | |
Locate and Label Tail | | |
Enter Oblique Mode | | |
Oblique Landmarks | | |
Save Landmarks |
This tutorial is to show the user how to landmark amygdala using CAWorks. It should be noted that the CAWorks interface facilitates our developed amygdala protocol. | ||
Amygdala landmark examples | Link to Screenshots showing landmark locations in MRI | |
Amygdala Subfield Segmentation | Link to Amygdala Subfields in MRI with corresponding Mai atlas sections | |
Getting Started | The first step in our landmarking procedure is to view the MRI scan in CAWorks. more information | |
Locate and Label the Head | After locating the head of amygdala, place the cursor at the head and type "h" more information     head verification |
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Locate and Label the Tail | After locating the tail of the amygdala, place the cursor at the tail and type "t." more information     tail verification |
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Enter oblique mode | Select amygdala as the "Landmark Type" and then toggle the "Oblique Mode" button. more information | |
Oblique Landmarks | Place 6 landmarks on each slice 0, 1, 2 respectively. Use "a" to add the landmarks on the first slice. On subsequent slices, use "m" to move the propagated landmarks. more information | |
Save Landmarks | Click the "Save Landmarks to Disk" button and save the session. more information |